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CEDAR
macOS
Initializing search
GitHub
CEDAR
GitHub
Home
User Guide
User Guide
Introduction
CEDAR Basics for All Users
CEDAR Basics for All Users
Accounts and Logging In
Accounts and Logging In
Intro: Accounts and Logging In
Creating a CEDAR Account
Logging in with CEDAR
Visibility of your CEDAR Account
Finding Resources
Finding Resources
Intro: Finding Resources
Simple Searching
Organizing the Results
Constraining the Results by Type
Advanced Searching - Search Fields
Advanced Searching - Patterns
Viewing Resource Information
Viewing Resource Information
Intro: Viewing Resource Information
Viewing Resources Overview
Viewing Resource Content in CEDAR
Viewing Resource Content on the Web
Viewing Resource as Raw JSON
Viewing Resource Metadata
Desktop and Navigation
Desktop and Navigation
Intro: Desktop and Navigation
Managing CEDAR Resources
Navigating Within CEDAR
Your CEDAR Workspace
Filling Out (Creating) Metadata
Filling Out (Creating) Metadata
Intro: Filling Out (Creating) Metadata
Creating the Metadata Form (Instance) for Filling
Filling Out Metadata
Saving and Validating
Special Case—Submitting Your Metadata
Sharing Your Content
Sharing Your Content
Intro: Sharing Your Content
Creating Groups
How Permissions Work
Sharing for Reading and Writing
Sharing Via the Web
About CEDAR Templates
About CEDAR Templates
Description of a Template
Description of a Template
Intro: Description of a Template
Template Overview
Template Organization
Building Basic Templates
Building Basic Templates
Intro: Building Basic Templates
First Steps
Adding Fields
Adding Elements
Saving and Closing
Field Type Reference
More FAIR Templates Using Semantics [Partial]
More FAIR Templates Using Semantics [Partial]
Intro: More FAIR Templates Using Semantics
Why Semantics Are Important
Defining Your Answers with Term Lists
Choosing Controlled Terms
Creating lists in the metadata entry forms for users
Advanced Template Topics [Partial]
Advanced Template Topics [Partial]
Intro: Advanced Template Topics
Extending a Template (adding fields)
More Semantics
Understanding the Suggestion System
Updating and Versioning
Working with CDEs
Tips for Template Creation [Pending]
Tips for Template Creation [Pending]
Intro: Tips for Template Creation
About Template Compatibility
Composition
Recipes for Filling Out Everything (Titles, Field Names, Descriptions, Help Text)
Term Discovery/Selection
Advanced Topics for All Users
Advanced Topics for All Users
CEDAR Identifiers and IRIs
CEDAR Identifiers and IRIs
Intro: CEDAR Identifiers and IRIs
Browser Address URLs in CEDAR
Building Shareable Metadata Creation IRIs
How CEDAR Defines and Applies IRIs (URIs, URLs)
CEDAR's API
CEDAR's API
Intro: CEDAR's API
API—About Swagger Documentation
API—Finding and Accessing Metadata Instances
API—Using Google Sheets
CEDAR for caDSR Users
CEDAR for caDSR Users
Intro: CEDAR for caDSR Users
Use Case: Building templates from scratch
Use Case: Importing templates
Use Case: Building resusable groups of CDEs
Finding CDEs
CEDAR Workbench Orientation
Frequently Asked Questions
Glossary
Install Guides
Install Guides
Overview
Developer Install
Developer Install
Introduction
System Architecture
Prerequisites
Prerequisites
CEDAR User
macOS
Homebrew
Fix Homebrew
Wget
OpenSSL
iTerm2, oh-my-zsh, powerlevel10k
JDK
Jenv
Maven
Python
User, home directory, passwords and domain
User, home directory, passwords and domain
CEDAR Home Directory
Usernames and Passwords
CEDAR Domain
CEDAR CLI
CEDAR CLI
Overview
cedar-cli
cedar-cli commands
The code
The code
Overview
Clone the project repos
Scripts and aliases
Scripts and aliases
Install the scripts
Source shell scripts
CEDAR CLI commands 1
CEDAR CLI commands 1
Overview
env list
status
Start and stop aliases
Start and stop aliases
Startup and stop scripts
SSL certificates
SSL certificates
Overview
Copy self-signed certificates
Install the self-signed root certificates
Subdomains, directories
Subdomains, directories
Subdomains
Directories
CEDAR CLI commands 2
CEDAR CLI commands 2
cedarcli git commands
The code
The code
CEDAR Maven utils
Build CEDAR parent and libraries
Build CEDAR project
More CEDAR utils
Infrastructure services
Infrastructure services
MongoDB
OpenSearch
MySql
Redis
Neo4j
Keycloak
Keycloak
Overview
Download Keycloak
Install Keycloak event listener
Install CEDAR Keycloak theme
Configure Keycloak
Set up CEDAR realm
Nginx
Nginx
Overview
Install Nginx
Configure nginx
Start nginx
Set up CEDAR Keycloak administrator
Starting the infrastructure services
Microservices
Microservices
Configuring the CEDAR microservices
Initializing the backend data stores
Starting the CEDAR microservices
Performing a system reset
Frontend components
Frontend components
Overview
Install Node.js
Install Gulp and Angular CLI
Launch main frontend
Launch OpenView frontend
Logging in to CEDAR
Logging in to CEDAR
Logging in to CEDAR
Docker Install
Docker Install
Introduction
Prerequisites
Prerequisites
Operating System
Install Docker
Configure Docker
User, home directory, passwords and domain
User, home directory, passwords and domain
CEDAR Docker Home Directory
Usernames and Passwords
CEDAR Docker Domain
Scripts and aliases
Scripts and aliases
Install CEDAR CLI
Clone the Docker repos
Source shell scripts
CEDAR commands
CEDAR commands
Overview
cedarcli env list
cedarcli server status
One-time setup
One-time setup
One-time setup
Subdomains
BioPortal integration
Install the self-signed root certificates
Components
Components
Overview
Infrastructure services
Microservices
Frontends
Docker commands
Evaluate CEDAR
Evaluate CEDAR
Users
Components, URLs
CEDAR Embeddable Editor
CEDAR Embeddable Editor
Introduction
Try CEDAR Embeddable Editor
Developer Guide
Developer Guide
Overview
Guides
Guides
CEDAR Repository Model
CEDAR Template, Element, and Field Instances
CEDAR Template, Element, and Fields
CEDAR REST APIs
HOWTOs
HOWTOs
BioPortal integration with Docker
Transfer the ownership of several CEDAR artifacts
Operations and Management
Operations and Management
Operations and Management
macOS
¶
Please update your OS to the latest version, and please install all the available updates.