BioPortal integration with Docker¶
If you already installed CEDAR using the Docker method, and you want to try out the BioPortal integration as well, follow these steps:
Register to BioPortal, get your API key¶
Do this at: https://bioportal.bioontology.org/
Stop CEDAR microservices¶
cedarcli docker stop microservices
Edit the CEDAR env variables, add your BioPortal API key¶
vi $CEDAR_HOME/cedar-development/bin/templates/set-env-external.sh
export CEDAR_BIOPORTAL_API_KEY="..."
Double-check that the env var is updated:¶
Close your shell, open a new one. Then execute:
cedarcli env filter BIO
Restart the microservices¶
cedarcli docker start microservices